
Data Scientist for Digital Pathology
12 hours ago
We are seeking a highly motivated PhD candidate to join our research team as a Machine Learning Engineer. The ideal candidate will have a strong background in machine learning, deep learning, and biomedical image analysis.
Job Description:
The successful candidate will contribute to the development and optimization of deep learning models for analyzing digitized H&E slides. This role is well-suited for researchers aiming to apply advanced computational methods to biomedical challenges.
Responsibilities:
- Design, develop, and train convolutional neural networks (CNNs) and related ML models on H&E-stained histology images.
- Use and extend tools such as QuPath for cell annotations, segmentation models, and dataset curation.
- Preprocess, annotate, and manage large image datasets to support model training and validation.
- Collaborate with cross-disciplinary teams to integrate image-based predictions with molecular and clinical data.
- Analyze model performance and contribute to improving accuracy, efficiency, and robustness.
- Document research findings and contribute to publications in peer-reviewed journals.
Qualifications:
- PhD in Computer Science, Biomedical Engineering, Data Science, Computational Biology, or a related discipline.
- Demonstrated research experience in machine learning, deep learning, or biomedical image analysis.
- Strong programming skills in Python and experience with ML frameworks such as TensorFlow or PyTorch.
- Familiarity with digital pathology workflows, image preprocessing/augmentation, and annotation tools.
- Ability to work collaboratively in a multidisciplinary research environment.
Preferred Qualifications:
- Background in cancer histopathology or biomedical image analysis.
- Knowledge of multimodal data integration, including spatial transcriptomics.
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