Bioinformatics Specialist
3 weeks ago
Bioinformatics Pipeline Developer
Your Tasks
- Develop and maintain the Nextflow pipelines for our Online Pipeline Platform, OP².
- Use your bioinformatics expertise to extend our analytical capabilities
- Work closely together with our domain experts to transform their knowledge into code
- Support our customers by investigating pipeline issues and resolving them
Essential Requirements
- You have a BSc or MSc in an appropriate field (e.g. Bioinformatics, Bioengineering, Computer Science).
- You have experience developing Bioinformatics pipelines, ideally using Nextflow.
- You are proficient in Python and R.
- You can understand basic Bash scripts and find your way around Linux systems.
- You are proficient in at least one bioinformatics workflow, such as variant calling, transcriptomics, or immune repertoire profiling.
- You have experience with basic development tools such Git, Docker, and Jira.
- You apply the best practices from software engineering such as code versioning, clean coding, testing, and containerization.
Desirable Traits
- You have experience working with AWS (S3, ECR, AWS Batch).
- You have experience working in cross-functional teams consisting of bioinformaticians and software engineers.
- You have experience with cloud services for compute, data storage, and containerization.
- You are eager to learn about various bioinformatics domains such as epigenomics, metagenomics, proteomics, etc.
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